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**2377**- (**download**) (**annotate**)*Mon Jun 3 19:41:56 2013 UTC*(8 years, 6 months ago) by*jhr*File size: 10483 byte(s)

Create new branch for Charisee's Einstein stuff

*************************************************** *************************************************** THIS TODO HAS BEEN MOVED TO THE DIDEROT WIKI: http://diderot-wiki.cs.uchicago.edu/index.php/Todo PLEASE USE THAT PAGE TO UPDATE PROBLEMS AND PROGRESS *************************************************** *************************************************** NOTE: GLK's approximate ranking of 8 most important tagged with [GLK:1], [GLK:2], ... ======================== SHORT TERM ============= (*needed* for streamlines & tractography) ======================== [GLK:2] Add sequence types (needed for evals & evecs) syntax types: ty '{' INT '}' value construction: '{' e1 ',' … ',' en '}' indexing: e '{' e '}' [GLK:3] evals & evecs for symmetric tensor[2,2] and tensor[3,3] (requires sequences) ability to emit/track/record variables into dynamically re-sized runtime output buffer [GLK:4] tensor fields from tensor images: Initially need at least convolution on tensor[2,2] and tensor[3,3] (the same component-wise convolution as for vectors). ======================== SHORT-ISH TERM ========= (to make using Diderot less annoying to ======================== program in, and slow to execute) Allow ".ddro" file extensions in addition to ".diderot" Be able to output values of type tensor[2,2] and tensor[3,3]; (currently only scalars & vectors). Want to add some regression tests based on this and currently can't [GLK:1] Proper handling of stabilize method Convolution on general tensor images (order > 2) allow "*" to represent "modulate": per-component multiplication of vectors, and vectors only (not tensors of order 2 or higher). Once sequences are implemented this should be removed: the operation is not invariant WRT basis so it is not a legit vector computation. implicit type promotion of integers to reals where reals are required (e.g. not exponentiation "^") [Nick working on this] Save Diderot output to nrrd, instead of "mip.txt" For grid of strands, save to similarly-shaped array For list of strands, save to long 1-D (or 2-D for non-scalar output) list For ragged things (like tractography output), will need to save both complete list of values, as well as list of start indices and lengths to index into complete list [GLK:6] ability to declare a field so that probe positions are *always* "inside"; with various ways of mapping the known image values to non-existant index locations. One possible syntax emphasizes that there is a index mapping function that logically precedes convolution: F = bspln3 ⊛ (img ◦ clamp) F = bspln3 ⊛ (img ◦ repeat) F = bspln3 ⊛ (img ◦ mirror) where "◦" or "∘" is used to indicate function composition Level of differentiability in field type should be statement about how much differentiation the program *needs*, rather than what the kernel *provides*. The needed differentiability can be less than or equal to the provided differentiability. Use ∇⊗ etc. syntax syntax [DONE] typechecking IL and codegen Add type aliases for color types rgb = real{3} rgba = real{4} Revisit how images are created within the language. The "load" operator should probably go away, and its strange that strings are there only as a way to refer to nrrd filenames ============================== MEDIUM TERM ================== (*needed* for particles) ============================== [Lamont working on this] run-time birth of strands "initially" supports lists "initially" supports lists of positions output from different initalization Diderot program (or output from the same program; e.g. using output of iso2d.diderot for one isovalue to seed the input to another invocation of the same program) [Lamont working on this] Communication between strands: they have to be able to learn each other's state (at the previous iteration). Early version of this can have the network of neighbors be completely static (for running one strand/pixel image computations). Later version with strands moving through the domain will require some spatial data structure to optimize discovery of neighbors. ============================ MEDIUM-ISH TERM ============ (to make Diderot more useful/effective) ============================ [GLK:5] Want code-generation working for tensors of order three. Order three matters for edge detection in scalar fields (to get second derivatives of gradient magnitude), second derivatives of vector fields (for some feature extraction), and first derivatives of diffusion tensor fields. Python/ctypes interface to run-time support for Python interop and GUI Allow integer exponentiation ("^2") to apply to square matrices, to represent repeated matrix multiplication Put small 1-D and 2-D fields, when reconstructed specifically by tent and when differentiation is not needed, into faster texture buffers. test/illust-vr.diderot is good example of program that uses multiple such 1-D fields basically as lookup-table-based function evaluation extend norm (|exp|) to all tensor types [DONE for vectors and matrices] determinant ("det") for tensor[3,3] add ":" for tensor dot product (contracts out two indices instead of one like •), valid for all pairs of tensors with at least two indices test/uninit.diderot: documents need for better compiler error messages when output variables are not initialized; the current messages are very cryptic want: warnings when "D" (reserved for differentiation) is declared as a variable name (get confusing error messages now) ============================== LONG TERM ==================== (make Diderot more interesting/attractive from ============================== a research standpoint) IL support for higher-order tensor values (matrices, etc). tensor construction [DONE] tensor indexing [DONE] tensor slicing Better handling of variables that determines the scope of a variable based on its actual use, instead of where the user defined it. So, for example, we should lift strand-invariant variables to global scope. Also prune out useless variables, which should include field variables after the translation to mid-il. test/vr-kcomp2.diderot: Add support for code like (F1 if x else F2)@pos This will require duplication of the continuation of the conditional (but we should only duplicate over the live-range of the result of the conditional. [GLK:7] Want: non-trivial field expressions & functions. scalar fields from scalar fields F and G: field#0(2)[] X = (sin(F) + 1.0)/2; field#0(2)[] X = F*G; scalar field of vector field magnitude: image(2)[2] Vimg = load(...); field#0(2)[] Vlen = |Vimg ⊛ bspln3|; field of normalized vectors (for LIC and vector field feature extraction) field#2(2)[2] F = ... field#0(2)[2] V = normalize(F); scalar field of gradient magnitude (for edge detection)) field#2(2)[] F = Fimg ⊛ bspln3; field#0(2)[] Gmag = |∇F|; scalar field of squared gradient magnitude (simpler to differentiate): field#2(2)[] F = Fimg ⊛ bspln3; field#0(2)[] Gmsq = ∇F•∇F; There is value in having these, even if the differentiation of them is not supported (hence the indication of "field#0" for these above) Introduce region types (syntax region(d), where d is the dimension of the region. One useful operator would be dom : field#k(d)[s] -> region(d) Then the inside test could be written as pos ∈ dom(F) We could further extend this approach to allow geometric definitions of regions. It might also be useful to do inside tests in world space, instead of image space. co- vs contra- index distinction Permit field composition: field#2(3)[3] warp = bspln3 ⊛ warpData; field#2(3)[] F = bspln3 ⊛ img; field#2(3)[] Fwarp = F ◦ warp; So Fwarp(x) = F(warp(X)). Chain rule can be used for differentation. This will be instrumental for expressing non-rigid registration methods (but those will require co-vs-contra index distinction) Allow the convolution to be specified either as a single 1D kernel (as we have it now): field#2(3)[] F = bspln3 ⊛ img; or, as a tensor product of kernels, one for each axis, e.g. field#0(3)[] F = (bspln3 ⊗ bspln3 ⊗ tent) ⊛ img; This is especially important for things like time-varying fields and the use of scale-space in field visualization: one axis of the must be convolved with a different kernel during probing. What is very unclear is how, in such cases, we should notate the gradient, when we only want to differentiate with respect to some subset of the axes. One ambitious idea would be: field#0(3)[] Ft = (bspln3 ⊗ bspln3 ⊗ tent) ⊛ img; // 2D time-varying field field#0(2)[] F = lambda([x,y], Ft([x,y,42.0])) // restriction to time=42.0 vec2 grad = ∇F([x,y]); // 2D gradient representation of tensor symmetry (have to identify the group of index permutations that are symmetries) dot works on all tensors outer works on all tensors Help for debugging Diderot programs: need to be able to uniquely identify strands, and for particular strands that are known to behave badly, do something like printf or other logging of their computations and updates. Permit writing dimensionally general code: Have some statement of the dimension of the world "W" (or have it be learned from one particular field of interest), and then able to write "vec" instead of "vec2/vec3", and perhaps "tensor[W,W]" instead of "tensor[2,2]/tensor[3,3]" Traits: all things things that have boilerplate code (especially volume rendering) should be expressed in terms of the unique computational core. Different kinds of streamline/tractography computation will be another example, as well as particle systems. Einstein summation notation "tensor comprehension" (like list comprehension) Fields coming from different sources of data: * triangular or tetrahedral meshes over 2D or 3D domains (of the source produced by finite-element codes; these will come with their own specialized kinds of reconstruction kernels, called "basis functions" in this context) * Large point clouds, with some radial basis function around each point, which will be tuned by parameters of the point (at least one parameter giving some notion of radius) ====================== BUGS ================= ====================== test/zslice2.diderot: // HEY (bug) bspln5 leads to problems ... // uncaught exception Size [size] // raised at c-target/c-target.sml:47.15-47.19 //field#4(3)[] F = img ⊛ bspln5;

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